RnoEX6041011 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100414722-100420448:+
Coord C1 exon
chr9:100414722-100414835
Coord A exon
chr9:100415411-100415584
Coord C2 exon
chr9:100420335-100420448
Length
174 bp
Sequences
Splice sites
3' ss Seq
CATGCTGGTGTCTCTTGCAGAGG
3' ss Score
10.72
5' ss Seq
TTGGTGATT
5' ss Score
2.11
Exon sequences
Seq C1 exon
CCCCCTCCCCCTGCTTCCGGAGCCCATGTATGAATGGGGGTATCTGCGAGGATCTAGGAACAGATTTCTCCTGCCACTGCCAACCAGGATATACAGGACACCGGTGTCAGGCAG
Seq A exon
AGGTGGACTGCGGTCAGCCTGAGGAGGTAAAACATGCTACCATGCGTCTCAATGGAACTCGCATGGGCTCGGTGGCCCTGTACACATGTGACCCCGGCTTCAGCCTGAGCGTCCTCAGCCATATGCGTGTCTGTCAGCCACAAGGTGTCTGGAGCCAGCCTCCCCAGTGCATTG
Seq C2 exon
AAGTAGATGAGTGCCAGTCTCAGCCATGCCTGCATAAAGGCTCCTGCCAGGACCTCATTGCTGGTTACCAGTGCCTCTGCAGCCCGGGGTACGAAGGAGTCCACTGTGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'18-18,'18-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCCTGCTTCCGGAG
R:
AGCTCACAGTGGACTCCTTCG
Band lengths:
222-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]