Special

ENSG00000162804 @ hg38

Biotype
protein_coding
Gene Symbol
SNED1
Description
sushi, nidogen and EGF like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr2:240998838-241095568:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
22
chr2:241064012-241064033
+
81.33
42.05
0
Alternative 3'ss
66
chr2:241063968-241064033
+
18.19
42.05
0
Exon Skipping
111
chr2:241044420-241044530
+
15.05
61.5
0
Exon Skipping
86
chr2:241074313-241074398
+
6.59
100
0
Exon Skipping
114
chr2:241062791-241062904
+
72.13
95.4
0
Exon Skipping
145
chr2:241071576-241071720
+
92.27
29.47
0
Exon Skipping
99
chr2:241073266-241073364
+
82.64
53.91
0
Exon Skipping
114
chr2:241040075-241040188
+
94.42
34.91
0
Exon Skipping
114
chr2:241040300-241040413
+
95.88
33.17
0
Intron Retention
1810
chr2:241049934-241051743
+
22.06
63.76
0
Intron Retention
180
chr2:241051861-241052040
+
7.37
42.47
0
Intron Retention
197
chr2:241052158-241052354
+
15.64
100
0
Intron Retention
9464
chr2:241053327-241062790
+
43.59
92.59
0
Intron Retention
682
chr2:241062905-241063586
+
29.28
100
0
Intron Retention
311
chr2:241063701-241064011
+
16.52
54.91
0
Intron Retention
341
chr2:241064958-241065298
+
9.77
32.89
0
Intron Retention
2168
chr2:241065596-241067763
+
8.9
46.02
0
Intron Retention
1374
chr2:241070202-241071575
+
10.01
51.26
0
Intron Retention
1387
chr2:241071879-241073265
+
18.84
71.43
0
Intron Retention
8312
chr2:241073365-241081676
+
24.81
98.31
0
Intron Retention
483
chr2:241081794-241082276
+
14.56
88.07
0
Intron Retention
889
chr2:241087476-241088364
+
56.55
95.92
0
Intron Retention
2059
chr2:241034731-241036789
+
7.77
33.33
0
Intron Retention
324
chr2:241036916-241037239
+
7.41
69.23
0
Intron Retention
2721
chr2:241037354-241040074
+
10.97
47.38
0
Intron Retention
111
chr2:241040189-241040299
+
7.39
48.12
0
Intron Retention
7901
chr2:241040414-241048314
+
13.1
68.08
0
Intron Retention
221
chr2:241048441-241048661
+
17.83
68.89
0
Intron Retention
5027
chr2:241082365-241087391
+
14.34
46.36
0
Intron Retention
3235
chr2:241088403-241091637
+
36.86
100
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000047793 Sned1 1-to-1
Mouse mm9 ENSMUSG00000047793 Sned1 1-to-1
Rat rn6 ENSRNOG00000023548 Sned1 1-to-1
Cow bosTau6 ENSBTAG00000014132 SNED1 1-to-1
Chicken galGal4 ENSGALG00000006039 SNED1 1-to-1
Chicken galGal3 ENSGALG00000006039 SNED1 1-to-1
Zebrafish danRer10 ENSDARG00000044433 sned1 1-to-1