MmuEX0044125 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93274605-93280594:+
Coord C1 exon
chr1:93274605-93274718
Coord A exon
chr1:93275297-93275470
Coord C2 exon
chr1:93280481-93280594
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATGCTGGTGTTCTCTTGCAGAGG
3' ss Score
9.32
5' ss Seq
TTGGTGATT
5' ss Score
2.11
Exon sequences
Seq C1 exon
CTCCCTCACCCTGCTTCCGGAGCCCATGTATGAATGGGGGTACCTGTGAGGATCTAGGGACAGATTTCTCCTGCTACTGCCAGCCAGGGTATACAGGACACCGGTGTCAGGCAG
Seq A exon
AGGTGGACTGTGGTCACCCTGAGGAGGTGGAGCATGCTACCATGCGCTTCAACGGAACTCACGTGGGCTCAGTGGCCCTGTACACATGTGAGCCCGGCTTCAGCCTGAGTGCCCTCAGCCATATACGTGTCTGTCAGCCACAAGGGGTCTGGAGCCAGCCTCCCCAGTGCATTG
Seq C2 exon
AAGTAGATGAGTGCCGGTCTCAGCCATGCCTGCACGGAGGCTCCTGCCAGGACCTCATTGCTGATTACCAGTGCCTCTGCAGCCCGGGGTATGAAGGAGTCCACTGTGAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793_MULTIEX3-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=79.5)
A:
NO
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCACCCTGCTTCCG
R:
AGCTCACAGTGGACTCCTTCA
Band lengths:
226-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types