MmuEX0044117 @ mm10
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:93285796-93287023:+
Coord C1 exon
chr1:93285796-93285940
Coord A exon
chr1:93286012-93286094
Coord C2 exon
chr1:93286928-93287023
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCCCTGTCTGCAGGTT
3' ss Score
11.35
5' ss Seq
CACGTGCGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCCCCAGGGATGGCACCGACAGACGCTGGCACCATGGAGGACACCACTCACGGATGCTCAGAAACAGACCAGCCCCTGTGCGCCTGCCTGAGCTGCGCCTGCTCAATGACCACAGTGCCCCTGAAACACCAACTCAGTCATCCAG
Seq A exon
GTTCTCAGAGCTTGTAGATGGAAGAGGAAGAGTGAGTGCCAGGTTTGGTGGCTTGCCCAGCAGAGCAGTAACTGTGAGATCAC
Seq C2 exon
AACCCACCACTCCGGTGCCACTCAAGAACACAGAGGCCCCTGAGCAGGTCCATCTGGCCCTCCAGCTACCCAAGAACAGCAGCAAAGACACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.632 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAGAAACAGACCAGCC
R:
CTGCTGTTCTTGGGTAGCTGG
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types