MmuEX0044117 @ mm9
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95182373-95183600:+
Coord C1 exon
chr1:95182373-95182517
Coord A exon
chr1:95182589-95182671
Coord C2 exon
chr1:95183505-95183600
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTGCCCTGTCTGCAGGTT
3' ss Score
11.35
5' ss Seq
CACGTGCGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCCCCAGGGATGGCACCGACAGACGCTGGCACCATGGAGGACACCACTCACGGATGCTCAGAAACAGACCAGCCCCTGTGCGCCTGCCTGAGCTGCGCCTGCTCAATGACCACAGTGCCCCTGAAACACCAACTCAGTCATCCAG
Seq A exon
GTTCTCAGAGCTTGTAGATGGAAGAGGAAGAGTGAGTGCCAGGTTTGGTGGCTTGCCCAGCAGAGCAGTAACTGTGAGATCAC
Seq C2 exon
AACCCACCACTCCGGTGCCACTCAAGAACACAGAGGCCCCTGAGCAGGTCCATCTGGCCCTCCAGCTACCCAAGAACAGCAGCAAAGACACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'36-36,'36-33,37-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.632 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAGAAACAGACCAGCC
R:
CTGCTGTTCTTGGGTAGCTGG
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: