DreEX6021983 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27507507-27511962:+
Coord C1 exon
chr6:27507507-27507636
Coord A exon
chr6:27509651-27509733
Coord C2 exon
chr6:27511864-27511962
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGTTGCTTTTCTTTTTCAGATA
3' ss Score
12.94
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
Exon sequences
Seq C1 exon
TACCAGTAAAGAGCACTAGCAGAGGTGACAGACCTCAGGGTGGACAGGACTACCAGATGGGGCAGACTTTGACACAAGTTCAAGATGGAGGCACAGATGAGAACACAGAACTCCTTGAAGAGCCACTAAG
Seq A exon
ATATACAGAGCTTATCGACGGAAGGGGGAGAATTACAGCTAAATTTACCAAACTTCCACATAAAACCATCAGACACCGCATTA
Seq C2 exon
AGCCTGATCCTCCAATCAAATTAGAAAGGATGGAAGAAACCACAAATAAGATTAGTCTAGCTCTGGAAATTCCTGAAGAAGCGTCAAAGAGTAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'27-34,'27-32,28-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.466 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF055076=MAGP=PU(8.2=23.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACCAGATGGGGCAGACT
R:
ACTCTTTGACGCTTCTTCAGGA
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]