GgaEX7007035 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4404511-4405493:+
Coord C1 exon
chr9:4404511-4404655
Coord A exon
chr9:4404870-4404952
Coord C2 exon
chr9:4405407-4405493
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCACAGCTGTGCTCCCCCAGGTT
3' ss Score
7.44
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
TGCAGAAGGATGGGGCTCCGGAGAGGCGCTGGAGCCAGGCTGGCCATCCCCGTGTCCTGCGCAACAGGCTGCCCCCGGCCTTCCTGCCCGAGCTCCGCTTGCTTGCAGACCATGACACAGCTGAAGAGCCCTCGCCAGCCCCCAG
Seq A exon
GTTCACTGAGCTGGTGGATGGCAGAAGGAGGATCAGTGCCAGGTTCGGCACTTTGCCAAGCAAATCCATCACCGTGAAGACAC
Seq C2 exon
AGCCAGAGGCTCCCGTGAGGCTGGAGAACAGCGAGGAGCCCAGCCGGAGCAGTCTGGCACTGCAGCTGCGAGAGGCATGGAGCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'41-51,'41-46,42-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.653 A=0.379 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGGATGGGGCTCC
R:
GTTCTCCAGCCTCACGGGA
Band lengths:
174-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]