MmuEX0044124 @ mm9
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95170921-95172047:+
Coord C1 exon
chr1:95170921-95171037
Coord A exon
chr1:95171182-95171295
Coord C2 exon
chr1:95171874-95172047
Length
114 bp
Sequences
Splice sites
3' ss Seq
GACCTTCTGTGTTCTTGCAGCTC
3' ss Score
11.92
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAAGCCAGACTCCTGTGCCTCTGGCCCCTGTCATAATGGTGGGACTTGTTTCCACTACATTGGCAAATACAAGTGTGACTGCCCTCCAGGATTCTCTGGACGGCACTGTGAGATAG
Seq A exon
CTCCCTCACCCTGCTTCCGGAGCCCATGTATGAATGGGGGTACCTGTGAGGATCTAGGGACAGATTTCTCCTGCTACTGCCAGCCAGGGTATACAGGACACCGGTGTCAGGCAG
Seq C2 exon
AGGTGGACTGTGGTCACCCTGAGGAGGTGGAGCATGCTACCATGCGCTTCAACGGAACTCACGTGGGCTCAGTGGCCCTGTACACATGTGAGCCCGGCTTCAGCCTGAGTGCCCTCAGCCATATACGTGTCTGTCAGCCACAAGGGGTCTGGAGCCAGCCTCCCCAGTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCCAGACTCCTGTGCC
R:
GACACGTATATGGCTGAGGGC
Band lengths:
248-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: