BtaEX6019572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014132 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr3:120778037-120778768:+
Coord C1 exon
chr3:120778037-120778153
Coord A exon
chr3:120778278-120778391
Coord C2 exon
chr3:120778595-120778768
Length
114 bp
Sequences
Splice sites
3' ss Seq
GGGTTCCCGCGCCCTTGCAGCCC
3' ss Score
8.04
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGAAGCCAGACTCCTGCGCCTCGGGTCCCTGTCACAATGGCGGCACTTGCTTCCACTACATCGGCAAATACAAGTGTGACTGCCCCCCGGGCTTCTCGGGGCGGCACTGTGAGATAG
Seq A exon
CCCCCTCGCCCTGCTTCCGGAGCCCGTGCATGAATGGGGGCACCTGCGAGGACCTAGGCACAGACTTCTCCTGCCACTGCCAAGCAGGGTACACAGGACGCCGGTGCCAGGCAG
Seq C2 exon
AGGTAGACTGCGGGCCCCCCGGCGAGGTGCAGCATGCCACCCTGCGATTCAACGGCACCCGACTGGGCTCAGTGGCCCTGTACTTGTGTGACCGAGGCTACAGCCCAAGCGCCTCCAGCCATGTCCGGGTGTGCCAGCCACAGGGCGTCTGGAGCGAGCCCCCCCAGTGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014132-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=79.5)
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACAATGGCGGCACTT
R:
CTCGCTCCAGACGCCCTG
Band lengths:
247-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]