MmuEX6019419 @ mm10
Exon Skipping
Gene
ENSMUSG00000029491 | Pde6b
Description
phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide [Source:MGI Symbol;Acc:MGI:97525]
Coordinates
chr5:108420285-108421535:+
Coord C1 exon
chr5:108420285-108420349
Coord A exon
chr5:108421217-108421283
Coord C2 exon
chr5:108421488-108421535
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTCTGTTCTTTTCCCACAGCAC
3' ss Score
11.67
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
GAAATTGTCTTCTACAAAGTCATCGATTATATCCTCCACGGCAAAGAAGACATCAAAGTCATTCC
Seq A exon
CACACCCCCGGCTGATCACTGGGCCCTGGCCAGTGGCCTTCCAACCTACGTAGCAGAAAGTGGCTTT
Seq C2 exon
ATCTGTAACATCATGAATGCTTCAGCTGATGAAATGTTCAACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029491-'16-10,'16-9,17-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(11.8=100)
A:
PF0159021=GAF=FE(12.4=100)
C2:
PF0159021=GAF=FE(8.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCGATTATATCCTCCACGGC
R:
CTGAAAGTTGAACATTTCATCAGCTG
Band lengths:
95-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types