MmuEX6021646 @ mm9
Exon Skipping
Gene
ENSMUSG00000004952 | Rasa4
Description
RAS p21 protein activator 4 [Source:MGI Symbol;Acc:MGI:1858600]
Coordinates
chr5:136579150-136580523:+
Coord C1 exon
chr5:136579150-136579294
Coord A exon
chr5:136579707-136579876
Coord C2 exon
chr5:136580386-136580523
Length
170 bp
Sequences
Splice sites
3' ss Seq
ATTTTCTTTCCTGCTTTCAGAGC
3' ss Score
11.04
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCTAGGGCCAAAGAGTCGTGGATGGAACCACTCCAGCCTACCGTGCGCCAGGGCGTGGCGCAGCTGAAGGACTTCATTATGAAGCTTGTGGACATAGAAGAAAAGGAAG
Seq A exon
AGCTGGACCTGCAGCGGGCTTTGAACTCACAGGCACCACCTGTGAAGGAGGGACCATTGTTCATCCACAGGACCAAAGGCAAAGGCCCTCTTGCATCCTCCTCGTTCAAGAAACTCTACTTCTCCCTTACCACTGAAGCCCTCAGCTTCGCCAAGACGTCCAGCTCCAAG
Seq C2 exon
AAAAGCACCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACATCATGCAGGTCATCTATGCAGATGATGTTGGCCGTGCCCAGACTGTCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004952-'23-23,'23-21,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
PF0016924=PH=PU(40.2=75.4)
C2:
PF0016924=PH=FE(42.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGCCAAAGAGTCGTGGAT
R:
TGCACTGCAGGTAGACAGTCT
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: