BtaEX6110397 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N4Y6]
Coordinates
chr25:35079962-35081048:+
Coord C1 exon
chr25:35079962-35080106
Coord A exon
chr25:35080272-35080441
Coord C2 exon
chr25:35080911-35081048
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTTCCCTCCCTGGCCCGCAGAGC
3' ss Score
11.15
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GCGGTCCAGAATGTGGGCAACATGGACACGCCAGCTTCCAGGGCTAAGGAGGCTTGGATGGAACCGCTGCAGCCCACGGTGCGCCAGGGCGTGGCCCAGCTGAAGGACTTCATCACCAAGCTGGTGGACATCCAGGAGAAAGACG
Seq A exon
AGCTGGACCTGCAGCGGGCCCTGAGTTTGCAGGCACCCCCGGTGAAGGAGGGGCCACTCTTCATCCATAGGACCAAGGGCAAAGGCCCCCTCACGTCCTCCTCCTTCAAGAAGCTCCACTTCTCCCTTACCACGGAGGCCCTCAGCTTTGCCAAGACCCCCAGCTCCAAG
Seq C2 exon
AAAAGCACCCTCATCAAGCTCGCCAACATCCGGGCAGCAGAGAAGGTGGAGGAGAAGAGCTTCAGCAGCTCCCACGTCATGCAGGTTATCTACACGGATGATGCGGGCAAGCTCCAGACCGCCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005448-'26-24,'26-22,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
PF0016924=PH=PU(40.2=75.4)
C2:
PF0016924=PH=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAAGGAGGCTTGGATGGA
R:
CTTGCACTGCAGGTAGGCG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]