RnoEX6063936 @ rn6
Exon Skipping
Gene
ENSRNOG00000001431 | Rasa4
Description
RAS p21 protein activator 4 [Source:RGD Symbol;Acc:1565457]
Coordinates
chr12:23604069-23605504:-
Coord C1 exon
chr12:23605360-23605504
Coord A exon
chr12:23604739-23604908
Coord C2 exon
chr12:23604069-23604206
Length
170 bp
Sequences
Splice sites
3' ss Seq
TGCCTATTTCTTGCTTTCAGAGC
3' ss Score
10.35
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCGGTCCAGAACATAGGCAATATGGACACACCGGTCTCCAGGGCCAAAGAGTCGTGGATGGAACCACTACAGCCTACTGTGCGCCAGGGTGTGGTGCAGCTGAAGGACTTCATTACGAAGCTCGTGGACATAGAAGAAAAGGAAG
Seq A exon
AGCTGGACCTGCAGCGGGCATTGAACTTGCAGGCTCCGCCTGTGAAGGAGGGACCACTGTTTATCCACAGAACCAAAGGCAAAGGCCCTCTTGCGTCCTCCTCGTTCAAGAAACTCTACTTCTCTCTTACCACTGAAGCCCTCAGCTTCGCCAAGACATCCAGCTCCAAG
Seq C2 exon
AAAAGTGTCTTCATCAAGCTGGCCAGCATCCGGGCTGCGGAGAAGGTGGAGGAAAAGAGCTTCGGCAGCTCCCACGTCATGCAGGTCATCTACTCAGACGATGTTGGCCGGGCCCAGACTGTCTACCTGCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001431-'27-26,'27-23,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=PD(3.2=12.2)
A:
PF0016924=PH=PU(40.2=75.4)
C2:
PF0016924=PH=FE(42.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGACACACCGGTCTCCAG
R:
ACTGCAGGTAGACAGTCTGGG
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]