MmuEX6027392 @ mm10
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:133098631-133099714:+
Coord C1 exon
chr1:133098631-133098800
Coord A exon
chr1:133099182-133099309
Coord C2 exon
chr1:133099605-133099714
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCCGTTTGTCTTCACCTCAGACA
3' ss Score
7.94
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTGTGGAGAACTTCATCTACTCTTGTGCTGGCTGCTGTGTAGCTACATACATCTTGGGCATCTGTGACAGACACAATGACAACATCATGCTAAAGACCACGGGCCACATGTTCCATATAGATTTCGGCCGCTTCCTGGGTCACGCACAGATGTTTGGTAACATCAAGAG
Seq A exon
ACATGGCGTATGTCATCAATGGGGGTGACAAGCCTTCCAGCCGCTTCCATGATTTTGTTGACCTTTGCTGCCAAGCCTACAACCTCATTCGCAAGCACACCCACCTCTTCCTCAACCTTCTGGGCCTG
Seq C2 exon
ATGCTGTCCTGTGGAATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACACAGAGGCCAATGCCACCACCTACTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'48-40,'48-39,49-40
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTTGTGCTGGCTGCTG
R:
CATTGGCCTCTGTGTCCTGAG
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types