MmuEX6027392 @ mm9
Exon Skipping
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134995208-134996291:+
Coord C1 exon
chr1:134995208-134995377
Coord A exon
chr1:134995730-134995886
Coord C2 exon
chr1:134996182-134996291
Length
157 bp
Sequences
Splice sites
3' ss Seq
TCTATGTCCCCTTGGCCCAGGGA
3' ss Score
5.9
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTGTGGAGAACTTCATCTACTCTTGTGCTGGCTGCTGTGTAGCTACATACATCTTGGGCATCTGTGACAGACACAATGACAACATCATGCTAAAGACCACGGGCCACATGTTCCATATAGATTTCGGCCGCTTCCTGGGTCACGCACAGATGTTTGGTAACATCAAGAG
Seq A exon
GGACCGTGCCCCGTTTGTCTTCACCTCAGACATGGCGTATGTCATCAATGGGGGTGACAAGCCTTCCAGCCGCTTCCATGATTTTGTTGACCTTTGCTGCCAAGCCTACAACCTCATTCGCAAGCACACCCACCTCTTCCTCAACCTTCTGGGCCTG
Seq C2 exon
ATGCTGTCCTGTGGAATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACACAGAGGCCAATGCCACCACCTACTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-'29-33,'29-31,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTCTTGTGCTGGCTGCTG
R:
CATTGGCCTCTGTGTCCTGAG
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: