RnoEX0065956 @ rn6
Exon Skipping
Gene
ENSRNOG00000029938 | Pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:RGD Symbol;Acc:1306541]
Coordinates
chr13:49900969-49902063:+
Coord C1 exon
chr13:49900969-49901138
Coord A exon
chr13:49901469-49901625
Coord C2 exon
chr13:49901954-49902063
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTCCCTCCGCCCAGGGA
3' ss Score
7.87
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTGTGGAGAACTTCATCTACTCTTGTGCCGGCTGCTGTGTGGCTACATACATCTTGGGCATCTGTGACAGACACAATGACAACATCATGCTGAAGACCACGGGCCACATGTTCCATATAGACTTCGGCCGCTTCCTGGGCCACGCGCAGATGTTCGGTAATATCAAGAG
Seq A exon
GGACCGCGCCCCGTTTGTCTTCACCTCAGACATGGCGTATGTCATCAACGGGGGTGACAAGCCTTCCAGCCGCTTCCATGATTTTGTTGACCTTTGCTGCCAAGCCTACAACCTCATTCGCAAGCACACCCATCTCTTCCTCAACCTCCTGGGCCTG
Seq C2 exon
ATGTTGTCCTGTGGGATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACACGGAGGCCAATGCCACTACCTACTTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029938_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTACTCTTGTGCCGGCT
R:
CCTCCGTGTCCTGAGGTCTC
Band lengths:
242-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]