GgaEX1043801 @ galGal3
Exon Skipping
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1587316-1587994:-
Coord C1 exon
chr26:1587825-1587994
Coord A exon
chr26:1587523-1587679
Coord C2 exon
chr26:1587316-1587425
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGCCCCCAACGCAGGGA
3' ss Score
6.92
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GCTGTGGAGAACTTCATCTACTCCTGCGCTGGCTGCTGCGTGGCCACCTATGTGCTGGGGATCTGCGACCGGCACAACGACAACATCATGCTCAAGACCACTGGCCACATGTTTCACATCGATTTCGGCAGGTTCCTGGGCCACGCTCAGATGTTTGGCAACATCAAGAG
Seq A exon
GGACCGGGCGCCGTTTGTCTTCACCTCAGACATGGCATACGTCATCAATGGGGGGGACAAACCCTCCAGCCGCTTCCACGACTTCGTCGACCTGTGCTGCCAGGCTTACAACCTGATCCGCAAGCACACCCACCTCTTCCTCAACCTGCTGGGGCTG
Seq C2 exon
ATGCTGTCCTGTGGCATCCCTGAACTTTCCGACCTGGAGGACCTCAAATATGTCTACCATGCACTAAGGCCGCAGGACACCGATGCTGATGCCACCACCTACTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(25.9=100)
A:
PF0045422=PI3_PI4_kinase=FE(24.1=100)
C2:
PF0045422=PI3_PI4_kinase=PD(4.6=27.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCTACTCCTGCGCTGG
R:
CATCAGCATCGGTGTCCTGC
Band lengths:
250-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]