MmuEX6027786 @ mm10
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136282812-136286002:-
Coord C1 exon
chr1:136285909-136286002
Coord A exon
chr1:136283867-136283901
Coord C2 exon
chr1:136282812-136282881
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTCTCGTCATTGCCTTTTAGATA
3' ss Score
7.71
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGAGCCTGCAAAAGACGTGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACATCCGGGATAGTTCATCTAGTTCTGACTTCTCCTCCAG
Seq A exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
Seq C2 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'20-30,'20-29,22-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000048309fB783
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCAAAAGAAACATCCGG
R:
TAGGCCACGTTCCTATGAAGC
Band lengths:
113-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types