MmuEX6027786 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138179389-138182579:-
Coord C1 exon
chr1:138182486-138182579
Coord A exon
chr1:138180444-138180478
Coord C2 exon
chr1:138179389-138179458
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTCTCGTCATTGCCTTTTAGATA
3' ss Score
7.71
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CTGAGCCTGCAAAAGACGTGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACATCCGGGATAGTTCATCTAGTTCTGACTTCTCCTCCAG
Seq A exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
Seq C2 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'11-17,'11-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=1.000 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCAAAAGAAACATCCGG
R:
TAGGCCACGTTCCTATGAAGC
Band lengths:
113-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: