RnoEX6044397 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53160442-53165381:-
Coord C1 exon
chr13:53165288-53165381
Coord A exon
chr13:53161468-53161502
Coord C2 exon
chr13:53160442-53160511
Length
35 bp
Sequences
Splice sites
3' ss Seq
TCTCATCATTTGCCTTTTAGATA
3' ss Score
9.72
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGAGCCTGCGAAAGACATGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACGTCCTGGATAGTTCTTCTAGTTCTGACTTCACCTCCAG
Seq A exon
ATATACACGTCCCCAAACTCATTCTTCAGTCTCAG
Seq C2 exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACATGGCCTAAAGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'15-20,'15-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.769 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAAAAGAAACGTCCT
R:
GGCCATGTTCCTATGAAGCCA
Band lengths:
112-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]