DreEX6028980 @ danRer10
Exon Skipping
Gene
ENSDARG00000059965 | camsap2b
Description
calmodulin regulated spectrin-associated protein family, member 2b [Source:ZFIN;Acc:ZDB-GENE-070912-80]
Coordinates
chr2:45501161-45502202:+
Coord C1 exon
chr2:45501161-45501204
Coord A exon
chr2:45501802-45501871
Coord C2 exon
chr2:45501954-45502202
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTATTTCTTTCTCTTTCAGCAG
3' ss Score
10.49
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTTTCTTTTCTCTCTTAGGTCGCAACCTAACAATGATAGCTCAG
Seq A exon
CAGTTATCAGGCGGTCGTCCTCCATGTCATATGTGGATGGATGTGTAGGGACATGGCCTAAAGAGAAACG
Seq C2 exon
GTCTTCAGCTCATGGAATATCGTTTGAGATTCCTCTTGATGATAGGACGAGTTCATCTTCAGGACGTGGACTGAGCCGGTCAGTAAGCACAGAAGGTTTGGGTTTTAAAGTTCACCATGCGGCCAGAGGTATGCGGAGAAACCTTTCATTCCAGCCGGTTAATGGAAATGCTCACAGCAAAATACACGAGGAGGATGGCGAAGACTCCAACAGACCGATCAGCAGGCATCGTCTGGGGACCTACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059965-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.107 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
PF045758=DUF560=PU(25.0=87.5)
C2:
PF045758=DUF560=PD(73.8=87.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGCAACCTAACAATGATAGC
R:
GTTTCTCCGCATACCTCTGGC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]