MmuEX6027787 @ mm10
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136280306-136283901:-
Coord C1 exon
chr1:136283867-136283901
Coord A exon
chr1:136282812-136282881
Coord C2 exon
chr1:136280306-136282499
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTGCATTTGAAGGAG
3' ss Score
8.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
Seq A exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
Seq C2 exon
AACATCAGTGCATGGCGTTTCATTCGACATTTCTTTTGATAAAGAAGACAGTGCGCAGAGCTCCACTCCAAACCGGGGAATCATCCGCTCTGTTAGCAATGAAGGGCTCACTCTCAACAACAGCCGTGCATCCAAGCACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAACGGAGAAGAGGAGGAGAGCATTGAGGAAGAGCTTCATGTCGACCCTCATGGTGACCTCCAATCACCCATGCCTCTCAACACGAATGAACTGAACTCTAATGAGAGTACTCACTACAAGCTTCCAAATGGGGCTTTACAAAACAGAGTGCTTCTAGACGAGTTCGGGAATCAGATAGAAACGCCAAGCATTGAAGAAGCGTTACAGATAATCCACGATACTGAAAGACCTCCTCATACGCCACGGCCAGATCAGATCGCTAATGGCTTCTTTCTTCATGGTCAAGATCTAAGTATCCTGAATTCAAATATCAAGCTAAACCAGTCCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'22-32,'22-30,23-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.167 C2=0.899
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACACGGCCGCAGACTCA
R:
GATGCACGGCTGTTGTTGAGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types