RnoEX6044398 @ rn6
Exon Skipping
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53157937-53161502:-
Coord C1 exon
chr13:53161468-53161502
Coord A exon
chr13:53160442-53160511
Coord C2 exon
chr13:53157937-53160124
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTTTGCATTTGAAGGAG
3' ss Score
7.28
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ATATACACGTCCCCAAACTCATTCTTCAGTCTCAG
Seq A exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACATGGCCTAAAGAGAAAAG
Seq C2 exon
AACATCTGTACATGGCGTTTCATTTGATATTTCTTTCGATAAAGAAGACAATGCCCAGAGCTCCACTCCAAACCGAGGAATCATCCGCTCTGTTAGTAATGAGGGGCTCAACAACAGTCGGGCATCCAAACACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAATGGAGGAGAAGAGGAAAGCATTGAAGAAGAACTTCATGTCGACCCTCATGGGGACCTCAAATCTTACATGCCTCTCAGCACAAATGAACTGAACTCTAATGAGAATACTCACCACAAGCTCCCAAACGGGGCTTTACAAAATAGAGTGCTTCTAGATGAGTTTGGGAATCAGATTGAAACTCCGAGCATTGAAGAAGCATTACAGATAATCCATGATACTGAAAAACCTCCTCATACAGCGCGGCCAGATCAGATTGCTAATGGCTTCTTTCTTCACGGTCAGGATCTGAGTCTCCTGAATTCAAATATCAAGCTAAGCCAGTCCAGTCCTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=0.125 C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGTCCCCAAACTCATTCT
R:
AATGTGTTTGGATGCCCGACT
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]