DreEX6099105 @ danRer10
Exon Skipping
Gene
ENSDARG00000062173 | camsap2a
Description
calmodulin regulated spectrin-associated protein family, member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-3016]
Coordinates
chr22:22327232-22329555:-
Coord C1 exon
chr22:22329518-22329555
Coord A exon
chr22:22329351-22329420
Coord C2 exon
chr22:22327232-22329260
Length
70 bp
Sequences
Splice sites
3' ss Seq
TATGTATGTGTGCTGTACAGGTG
3' ss Score
8.01
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TCTCCCCCTTCGACCTCAACCACAGACTTCAGGCTCAA
Seq A exon
GTGAGATCAAGAGATCAACCTCAATGTCATTTGTGGAGAGCTTCATGGGCACCTGGCCCAAGGAGAAGAA
Seq C2 exon
ATCTCCTGCTCAGGGAGTGTCCTTTGAAATCCCATTTGATGAAGACAGTAACAACAAAACAACTACTGGCCGAGGGATGACTCGGTCTGTCAGCACTGAAGGGTTTGGTTTCAAGATGCCCCATGGAACCAGAGGCATAAAGAGAAACCTGTCCTTTCAGCCTGTCAATGGCAAGAACATGGGCATTGAGGAGGAAGGCTGTCCTGACACCCTGTCAGAAAATCATAACAGCCGTCTAAATGGCTCAGGGCCACCTAGCATTGAAGAGGCCCTTGAGATCATCCACAACTCAGAGAAAAAATCACAGAGCCCCAGGGCCCATTTGCCCAGTGAAGGCTTCTTTCTTCACCTCCAGAGTAAAAGTGAATTTAACCCCAAAGCAAAGGATAGTCAGCTAGATTCAGTATCAGAATCATCCAAAGGGGTCGCTAGCACGTCCACCACTGAAGTAGACACTGGCATTCATGTGCGGACAGAGGACATCCAAGAGACACTCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062173-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.281 C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCGACCTCAACCACAGAC
R:
TATGCCTCTGGTTCCATGGGG
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]