BtaEX6070982 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81317318-81320093:+
Coord C1 exon
chr16:81317318-81317403
Coord A exon
chr16:81317653-81317722
Coord C2 exon
chr16:81317969-81320093
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCGTGCATTTGAAGGAG
3' ss Score
6.27
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CAGTGGGGAAGGAGCTGCGTTCACACACTCTCGTCCCCATTTGCCTTCCAGGCACTTACAGCCCCAGCCTCATCCTTCAGCCTCAG
Seq A exon
GAGGAATAAGAAGGTCTTCGTCTATGTCCTATGTCGATGGCTTCATAGGGACGTGGCCCAAGGAGAAAAG
Seq C2 exon
ATCGTCAGTGCATGGAGTCTCATTTGATATTTCTTTTGATAAAGAAAACGCTGTGCAGAGATCCACCTCCAACCGAGGAATCACTCGCTCCCTTAGCAATGACGGGCTCGCCCTGAGCAACCACCGCGCAGCCAGGAACAGCCGGAAGAACCTGGCCTTCAAGCCGGTGGACGGGGAGGAGCACGCGGCGGGCATCGCGGAGGAGCGCACGGTGGGCTCTCACGGTGACCTGACCACCTACGCGCCCCGGAGCACAGGCGAGCTGAACTCCAACGAGAGCACGCACTACAGGTTCCCCAACGGAGCGCTGCACAACAGCGTGCTTCTCGACGAGGTTGGCAACCAGGTGGGGACCCCGAGCATCGAAGAGGCCTTGCAGATAATCCACGACACGGAGAAGCCCGCCCACACCCCGAGGCCGGGCCAGCTTGCCAACGGCTTCTTCCTCCACAGCCAGGAGCTGAGCTTCCTGAACGCCGGCGTCCCGCGCAGCCAGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153-'15-19,'15-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.208 C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGTTCACACACTCTCGTC
R:
GCTAAGGGAGCGAGTGATTCC
Band lengths:
169-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]