MmuEX6027787 @ mm9
Exon Skipping
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138176883-138180478:-
Coord C1 exon
chr1:138180444-138180478
Coord A exon
chr1:138179389-138179458
Coord C2 exon
chr1:138176883-138179076
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTGCATTTGAAGGAG
3' ss Score
8.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
Seq A exon
GAGGAATTAGAAGGTCTTCATCTATGTCTTATGTTGATGGCTTCATAGGAACGTGGCCTAAAGAGAAAAG
Seq C2 exon
AACATCAGTGCATGGCGTTTCATTCGACATTTCTTTTGATAAAGAAGACAGTGCGCAGAGCTCCACTCCAAACCGGGGAATCATCCGCTCTGTTAGCAATGAAGGGCTCACTCTCAACAACAGCCGTGCATCCAAGCACATTAGGAAAAATCTGTCCTTCAAGCCAGTGAACGGAGAAGAGGAGGAGAGCATTGAGGAAGAGCTTCATGTCGACCCTCATGGTGACCTCCAATCACCCATGCCTCTCAACACGAATGAACTGAACTCTAATGAGAGTACTCACTACAAGCTTCCAAATGGGGCTTTACAAAACAGAGTGCTTCTAGACGAGTTCGGGAATCAGATAGAAACGCCAAGCATTGAAGAAGCGTTACAGATAATCCACGATACTGAAAGACCTCCTCATACGCCACGGCCAGATCAGATCGCTAATGGCTTCTTTCTTCATGGTCAAGATCTAAGTATCCTGAATTCAAATATCAAGCTAAACCAGTCCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-'13-18,'13-17,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.167 C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATACACGGCCGCAGACTCA
R:
GATGCACGGCTGTTGTTGAGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: