GgaEX1012729 @ galGal4
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr8:1371313-1397187:-
Coord C1 exon
chr8:1397026-1397187
Coord A exon
chr8:1375079-1375945
Coord C2 exon
chr8:1371313-1371449
Length
867 bp
Sequences
Splice sites
3' ss Seq
TAATGTATCTTGTTTTATAGATT
3' ss Score
7.72
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTGCTCATTTGGCTATGATCGATACTCTTATGATGGCGTATACCGTAGAGATGGTCAGCGTTGAGAAAGTGATTGCGTGCACTCAGCAGTATTCGTCTTTCTTCCAAGCGACGGATCTACCTTATGACATAGAGGATGCTGTCATGTTCTGGATAAACAAG
Seq A exon
ATTGGAAAGTCCAAGTTATGCACCATCTCACCAACTGCATACGCCCCAGCAGCCTTATTCGTCTGTCCCAGGTAACATTTTACAAAAGGATTTAAGGGGGGATGAGACAAGGTGTCATTCTGAGTAAATTGCTACCTTACTTAAATTTCTTCAAAGCTTATTCATGCCAGGTGTTGCTGGGAGAGTCCTAGATGAAAGGCTAGTGAATGAGTTCTGTAATTTGTTCAGTATACAAATGAGGAAGTTTGTGCTTGTACCACTTGCATTTTTTTTTAATTTGAGTTCATTTTTTGCCACGTTAAATATGGCTTACAGCAATTATTTTTAGTATATTTTAGCAGTACTTGTAGTACTGCTAGTTTCACCAAGGACAAGCCCTGCCTGCCCAGCCTTCTATGGTCTTGTGATGATGCAGATGCCCAGAAAAGGTGTGGTGGATGCCACGCTCCTGGAGACATTCAAGGTCAGACTAGACCAGACTCCTGTGACCTGATGGAGCTGTAGGTGTCCCTGTTTGTTGCAGGAGAGTTGGACTAGGTGACCTTTTCATGTCCCTTCTGACTCAAATGCTTCTGTAATTCTGTTTTTTTCTCAATAATAAGTTCTTTGTCTAAGGAGTATAGCATATATATACAGGATGAGGTGAACTCAATTGTTCAAGTTGTGTTCTGAAAACAAATTTCTGCTGTTGCGGTGTTCTAAGTAGTGAAACAAACTAATTTGTTAAAGCAACAGAAACTTACTGCTATGAAAAATCATCTTAATGTTACCTTGGATTCCATGTTAATTTTGCTTAGGAGTCATCAGAAGGTCCACATCAATGTCTTACGTAGATGGCTATGTAGGGACATGGCCAAAAGAAAAGAG
Seq C2 exon
GATGATCAAAAGGCAGAAAATGACATGGCAATGAAACGAGCAGCATTATTGGAGAAGCGTTTGAGAAGGGAAAGAGAGACTCAGCTTCGAAAGCAGCAGCTGGAAGCAGAGCTAGAACATAAGAAAGAAGAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145_MULTIEX1-7/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.347 C2=0.848
Domain overlap (PFAM):
C1:
PF0030726=CH=PU(5.7=16.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTCATTTGGCTATGATCGA
R:
TGTCTCTTCTTTCTTATGTTCTAGCT
Band lengths:
297-1164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]