GgaEX1012729 @ galGal3
Exon Skipping
Gene
ENSGALG00000002145 | CAMSAP2
Description
NA
Coordinates
chr8:1386069-1389539:-
Coord C1 exon
chr8:1389443-1389539
Coord A exon
chr8:1386865-1386935
Coord C2 exon
chr8:1386069-1386138
Length
71 bp
Sequences
Splice sites
3' ss Seq
TAATGTATCTTGTTTTATAGATT
3' ss Score
7.72
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CAGCTGAACCTGTAAAAGATGCAGCTTCTGCTCACAGTTTGAATGCTAACAGAAGAAATTATGTGGATGGCCCATGTGGTTCTGACTTCGTAGCCAG
Seq A exon
ATTGGAAAGTCCAAGTTATGCACCATCTCACCAACTGCATACGCCCCAGCAGCCTTATTCGTCTGTCCCAG
Seq C2 exon
GAGTCATCAGAAGGTCCACATCAATGTCTTACGTAGATGGCTATGTAGGGACATGGCCAAAAGAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002145-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.640 C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGAACCTGTAAAAGATGCA
R:
CTCTTTTCTTTTGGCCATGTCCC
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]