MmuEX6027867 @ mm9
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:141131304-141137865:-
Coord C1 exon
chr1:141137700-141137865
Coord A exon
chr1:141133399-141134305
Coord C2 exon
chr1:141131304-141131432
Length
907 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCCTCTCCACTTTAGGTA
3' ss Score
10.88
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
TCCAACCCCTGTCATAATGGAGGTGTCTGCCACTCCCTGTGGGATGACTTCTCCTGCTCCTGCCCTACAAACACAGCGGGGAGAGCCTGCGAGCAAGTTCAGTGGTGTCAACTCAGCCCATGTCCTCCCACTGCAGAGTGCCAGCTGCTCCCTCAAGGGTTTGAAT
Seq A exon
GTATCGCAAACGCTGTTTTCAGCGGATTAAGCAGAGAAATACTCTTCAGAAGCAATGGGAACATTACCAGAGAACTCACCAATATCACATTTGCTTTCAGAACACATGATACAAATGTGATGATATTGCATGCAGAAAAAGAACCAGAGTTTCTTAATATTAGCATTCAAGATGCCAGATTATTCTTTCAATTGCGAAGTGGCAACAGCTTTTATACGCTGCACCTGATGGGTTCCCAATTGGTGAATGATGGCACATGGCACCAAGTGACTTTCTCCATGATAGACCCAGTGGCCCAGACCTCCCGGTGGCAAATGGAGGTGAACGACCAGACACCCTTTGTGATAAGTGAAGTTGCTACTGGAAGCCTGAACTTTTTGAAGGACAATACAGACATCTATGTGGGTGACCAATCTGTTGACAATCCGAAAGGCCTGCAGGGCTGTCTGAGCACAATAGAGATTGGAGGCATATATCTTTCTTACTTTGAAAATCTACATGGTTTCCCTGGTAAGCCTCAGGAAGAGCAATTTCTCAAAGTTTCTACAAATATGGTACTTACTGGCTGTTTGCCATCAAATGCCTGCCACTCCAGCCCCTGTTTGCATGGAGGAAACTGTGAAGACAGCTACAGTTCTTATCGGTGTGCCTGTCTCTCGGGATGGTCAGGGACACACTGTGAAATCAACATTGATGAGTGCTTTTCTAGCCCCTGTATCCATGGCAACTGCTCTGATGGAGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGATACACCGGTGTGAACTGTGAGGTGGATGTAGACAATTGCAAGAGTCATCAGTGTGCAAATGGGGCCACCTGTGTTCCTGAAGCTCATGGCTACTCTTGTCTCTGCTTTGGAAATTTTACCGGGAGATTTTGCAG
Seq C2 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAATGAGAAGAGAAACTTCACTTGCTACAATGGAGGCAGCTGCTCCATGTTCCAGGAGGACTGGCAATGTATGTGCTGGCCAGGTTTCACTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-'14-13,'14-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.0=48.2)
A:
PF0221019=Laminin_G_2=WD(100=41.6),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.2)
C2:
PF0000822=EGF=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCCCTGTCATAATGGAG
R:
ACTCTCCAGTGAAACCTGGCC
Band lengths:
294-1201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: