GgaEX0002856 @ galGal4
Exon Skipping
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2497840-2501880:-
Coord C1 exon
chr8:2501715-2501880
Coord A exon
chr8:2498516-2499419
Coord C2 exon
chr8:2497840-2497968
Length
904 bp
Sequences
Splice sites
3' ss Seq
CAATTATTATCTTTGCACAGGTC
3' ss Score
7.45
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TCCAGTCCTTGCCACAACGGTGGTGTATGCTATTCAATCTGGGATGACTTCACTTGCACTTGCCCCCCTAACACAGCAGGGAAAGCTTGTGAGGAAGTTAAGTGGTGTGAGCTTGGGCCCTGTCCTCATGAAGCACAATGCAAGCTGGCGCACCAAGGATTTGAAT
Seq A exon
GTCTCGCTAATGCAGTGTTTAGCGGCCGAAGCAGTGCTATATTTTACAGAAGCAACGGGAATATCGGCAGAGGCCTCACCAATATCGTGTTTGGCTTTCGAACTAGGGACAAAAATGTGATACTGCTGTATGCGGAGAAGGAGCCTGAGTTTGTTATCATCAGCATTCACAACTCCAAACTGGTCTTCCAACTGCAAAGCGGCAACAACTTTTACATGTTGACCCTCACTAGCTCGCTGACCGTGAGTGATGGGAAGTGGCACCAAGTTACGGTCTCCATGGTGGAGCCCCTGTCTCAGTTCTCGAGGTGGCACATGAATATCGATAACAAGGACGCTGCAACCAGCACAACTGCTACCGGAAGCCTCAACTTTCTACGAGAAGAAACAGACATCCATTTGGCTGACAAGGCTTTTGACAATTTGGATGGCCTGAGAGGATGCATGAGCACCATAGAAATCAGTGGCATTTATCTCTCCTACTTTGAAAATGCTGACATCCTGACTAAAAAACCTCAAGAGGAACAATTTCTCAAAATATCTGCAAACCCTGTTCTTACGGGCTGCTTACAGGAGGATGCCTGCAGCTCAGAGCCCTGTATGCACGAGGGGACATGTGAAGACTTGTACACCTCCTATCGCTGCACGTGTCGCCCGGGGTGGGTGGGTACCCACTGTGAGACCAACATCGATGAGTGCTTCTCCAACCCCTGCATTCATGGAAACTGCACAGATGGGATCAACTCTTATGAGTGCATTTGTGAACCTGGCTACACAGGGTTAAACTGTGAAGAGGATATAGACTACTGCCAGGGCCACCAGTGTGCAAACGGAGCCACCTGCATAGATGGGATTAATGGATATTCATGCCTGTGTGCTGGTAACTTTACAGGAAAGCTTTGCAG
Seq C2 exon
ATATCGAAGATTACCCTATACAGTTTGTGGGAATGAAGACAGAAATCTCACCTGTTACAATTACGGCAACTGTACTGACCTTGGAGGCAAGCTGGCCTGTGTGTGCCTGCCAGGATTTGCTGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287-'8-10,'8-8,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
PF0221019=Laminin_G_2=WD(100=41.4),PF0000822=EGF=WD(100=10.3),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.9)
C2:
PF0000822=EGF=WD(100=72.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCTTGCCACAACGGTG
R:
CAGCAAATCCTGGCAGGCA
Band lengths:
286-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]