RnoEX0024410 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56311112-56317331:-
Coord C1 exon
chr13:56317166-56317331
Coord A exon
chr13:56313254-56314160
Coord C2 exon
chr13:56311112-56311240
Length
907 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCCTTCCTGCTTTAGGTA
3' ss Score
11.76
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
TCCAACCCCTGCCATAATGGAGGTGTCTGCCACTCCCTGTGGGATGACTTCTCCTGCTCCTGCCCTACAAACACTTCGGGGAGAGCCTGCGACGAAGTTCAGTGGTGTCAGCTCAGCCCATGTCCTCCCATTGCAGAATGCCAGCTGGTCCCTCAAGGGTTTGAAT
Seq A exon
GTATCGCCAATGCTGCTTTCAGCGGATTAAGCAGCGAAATATTGTTCAGAAGCAATGGGAATATTACCAGAGAACTCACCAACATCACATTTGGTTTCAGAACACAGGATACAAATGCGGTGATACTGCATGCAGAAAAAGAACCAGAGTTTCTCAATATTAGCATTCAAGACTCCAGACTACTCTTTCAACTGCGAAGTGGCAACAGCTTTTATACGCTGCATCTGACGGGTTCCCAATTGGTGAATGACGGCGCATGGCACCGAGTGACTTTTTCCATGATAGACCCACGGGCCCAGACCTCCCTGTGGCAGATGGAGGTGGACGACCAGACACCCTTTGTGATAAGTGCAGTTGCTACTGGAAACCTGAACTTTCTGAAGGACAATACTGACATCTATGTGGGTGACCAAGCTGTTGACAATCAGAAAGGCCTGCAGGGCTGTCTGAGCACAGTACAGATAGGAGGGCTATATCTCTCTTACTTTGAAAGTCTTCATGGTTTCACTAGTAAGCCCCAAGAAGAGCAGTTTCTCAAAGTTTCTACAAATGTGGCACTTACTGGCTGTTTGCCACTCAGTGCCTGCCACTCTAGCCCCTGTCTGCATGGAGGAATTTGCGAAGACAGCTACAGCTCTTATCGGTGTGCCTGTCTCCCGGGATGGTCGGGGGCACACTGCGAAATCAACGTTGATGAGTGCTCCTCCAGCCCCTGTGTCCATGGCAACTGCTCGGACGGGGTTGCAGCCTACCACTGCAGGTGTGAGCCTGGCTATACTGGTGGGAACTGTGAAGCGGAGGTAGACACTTGCAAGAGTCATCAGTGTGCCAATGGGGCCACCTGCGTCAGTGGCGCTCAGGGCTACTCTTGCCTCTGTCTTGGAAATTTTACCGGCAGATTTTGCAG
Seq C2 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.0=48.2)
A:
PF0221019=Laminin_G_2=WD(100=41.6),PF0000822=EGF=WD(100=10.2),PF0000822=EGF=WD(100=9.9),PF0000822=EGF=WD(100=10.2)
C2:
PF0000822=EGF=WD(100=70.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAACCCCTGCCATAATGGA
R:
ACTCTCCAGTGAAACCTGGCC
Band lengths:
294-1201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]