MmuEX6028047 @ mm10
Exon Skipping
Gene
ENSMUSG00000066842 | Hmcn1
Description
hemicentin 1 [Source:MGI Symbol;Acc:MGI:2685047]
Coordinates
chr1:150860219-150993051:-
Coord C1 exon
chr1:150992784-150993051
Coord A exon
chr1:150876425-150876495
Coord C2 exon
chr1:150860219-150860377
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTAATCTCCACAGAAA
3' ss Score
10.69
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGATTGCCCAGGAAGTGGTCCACACAGTATTCCTGGTGGCTCTTTTTCGTTCTTCCCTAGCTGGAGATGGGACTCCGCAGTCTGAGAGCAGGGCTGAGGAGATTCCTGAGGGGGCGTCCACGCTGGCTTTTGTGTTTGATGTGACTGGGTCCATGTATGATGATTTAGTTCAGGTTATTGAAGGGGCTTCCAAAATTTTGGAGACGTCTTTGAAAAGACCTAAGAGACCTCTTTACAACTTTGCTTTGGTGCCCTTCCATGATCCAG
Seq A exon
AAATTGGTCCAGTGACAATTACCACAGATCCAAAAAAATTTCAGTATGAATTGAGAGAACTGTATGTTCAG
Seq C2 exon
GGAGGTGGTGACTGTCCAGAAATGAGCATCGGGGCTATAAAGATTGCCTTGGAAATCTCTCTTCCTGGGTCCTTCATCTATGTTTTCACTGATGCACGATCCAAGGATTATCGGCTCACCCATGAGGTGCTGCAGCTTATCCAACAGAAACAATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066842-'0-3,'0-0,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(28.5=54.4)
A:
PF135191=VWA_2=FE(13.4=100)
C2:
PF135191=VWA_2=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTTGGTGCCCTTCCAT
R:
GTTGGATAAGCTGCAGCACCT
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types