RnoEX0042100 @ rn6
Exon Skipping
Gene
ENSRNOG00000028627 | Hmcn1
Description
hemicentin 1 [Source:RGD Symbol;Acc:1564772]
Coordinates
chr13:68230439-68360664:-
Coord C1 exon
chr13:68360015-68360664
Coord A exon
chr13:68253180-68253250
Coord C2 exon
chr13:68230439-68230597
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAAATCTCCACAGAAA
3' ss Score
10.18
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAGGCGCTGCATCCTTGCCCAGCCCAGCCCAGCTCCTGGAAGGACCCGGGCTCTGGGCTGGTCCTCATCTCCTTCTCCGCTCCAAACTTTGAGTTAGTTCAGAGACTGCAAAAAGCTGATGAGGCACCGGGGAGGAAGTCCTCTGCTTGCTGCTGAGGAGTAAGCACAGTGCTAAGGAGCTCAGGGCAAAGAGAAAAGCAGCGAGCAAAACAAGAAAAGAAAAGAAAAAAAAATGATTGCCCAGGAACTGGTCCACACAGTTTTCCTGGTGGCTCTTTTTCATTCTTCCCTAGCTGGAGTTGGGACCCCGCAGTCGGAGAGCAGGGCTGAGGAGATTCCGGAGGGGGCGTCCACGTTGGCTTTTGTGTTTGATGTGACTGGCTCCATGTATGATGATTTAGTTCAGGTTATTGAAGGGGCTTCCAAAATTTTGGAGACGTCTTTGAAAAGACCTAAGAGACCTCTTTACAACTTTGCTTTGGTGCCCTTCCATGATCCAG
Seq A exon
AAATCGGTCCAGTGACAATTACCACAGATCCGAAAAAATTTCAGTATGAACTGAGAGAACTGTATGTTCAG
Seq C2 exon
GGAGGTGGCGATTGTCCAGAAATGAGTGTCGGGGCTATAAAGATTGCCCTGGAAATTTCTCTTCCTGGTTCCTTCATCTATGTTTTCACTGATGCACGATCCAAGGATTATCGTCTCACCCATGAGGTGCTGCAGCTTATCCAGCAGAAACAATCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028627-'0-3,'0-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF135191=VWA_2=PU(28.5=54.4)
A:
PF135191=VWA_2=FE(13.4=100)
C2:
PF135191=VWA_2=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTTGGTGCCCTTCCAT
R:
CTGGATAAGCTGCAGCACCTC
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]