BtaEX0017221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015235 | HMCN1
Description
Bos taurus hemicentin 1 (HMCN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192537]
Coordinates
chr16:68192901-68339031:+
Coord C1 exon
chr16:68192901-68193168
Coord A exon
chr16:68315400-68315470
Coord C2 exon
chr16:68338873-68339031
Length
71 bp
Sequences
Splice sites
3' ss Seq
CGTCATTTTTATCTCCACAGAGA
3' ss Score
9.83
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGATTTCCTGGGACATGATCCACACCATATTCTTGCTCGCTCTTCTTTATCCTTCCCGAGCGCAGGATGCAATCCCCCAGTCCGAGGTCGAGGCAGAAGAAATTCCCGAGGGGGCCTCAACCTTGGCTTTTGTGTTTGATGTGACTGGTTCCATGTATGATGATCTAGTTCAGGTGATCGAGGGGGCTTCCAAAATTTTGGAGACGTCTTTGAAAAGACCTAAGAGACCTCTATTCAACTTTGCTTTGGTGCCTTTCCACGACCCAG
Seq A exon
AGATTGGCCCAGTAACAGTTACCACAGATCCCAAGAAATTTCAATATGAGCTCAGAGAACTCTATGTTCAG
Seq C2 exon
GGTGGTGGCGATTGTCCAGAAATGAGTATCGGAGCTATAAAAATTGCCTTGGAAATTTCCCTTCCTGGGTCTTTCATCTACGTTTTCACTGATGCGCGATCCAAGGATTATCGACTCACTCATGAGGTGCTGCAGCTTATCCAGCAGAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015235-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCAACCTTGGCTTTTGTG
R:
TTTCTGGACAATCGCCACCAC
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development