MmuEX6029803 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182492062-182512276:-
Coord C1 exon
chr1:182512207-182512276
Coord A exon
chr1:182492752-182492870
Coord C2 exon
chr1:182492062-182492195
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTGTGGCTTTGTGTTCTCAGGGG
3' ss Score
8.99
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGATCTGCGCTGACCCCCAGTTCATTATTGGAGGAGCCACCCGCACAGACATCTGCCAAGGAGCCCTGG
Seq A exon
GGGACTGCTGGCTGCTGGCTGCCATCGCCTCCCTCACCTTGAATGAGGAAATCCTGGCTCGGGTTGTGCCTCCAGATCAGAGCTTCCAGGAAAACTATGCAGGCATCTTCCACTTCCAG
Seq C2 exon
TTCTGGCAATATGGCGAGTGGGTGGAGGTGGTGGTGGACGACAGGCTGCCCACTAAGGACGGGGAGCTGCTCTTTGTGCATTCAGCTGAAGGGAGTGAGTTCTGGAGTGCCCTTCTGGAGAAAGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'6-7,'6-4,9-7=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCTGCGCTGACCCCC
R:
GGCATAGGCTTTCTCCAGAAGG
Band lengths:
202-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types