RnoEX6045692 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100903969-100923462:-
Coord C1 exon
chr13:100923393-100923462
Coord A exon
chr13:100904642-100904760
Coord C2 exon
chr13:100903969-100904102
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCATGGCTTTGCATTCTCAGGGG
3' ss Score
6.72
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGATCTGCGCAGACCCCCAGTTCATTATTGGAGGTGCTACCCGCACAGACATCTGCCAAGGAGCCCTTG
Seq A exon
GGGACTGCTGGCTTCTGGCTGCCATCGCCTCCCTCACCTTGAATGAAGAAATCCTGGCTCGAGTTGTGCCTCTAGACCAGAGCTTCCAGGAAAACTATGCAGGCATCTTCCATTTCCAG
Seq C2 exon
TTCTGGCAATATGGCGAATGGGTGGAGGTGGTGGTGGACGACAGACTGCCCACTAAGGACGGGGAGCTGCTCTTTGTTCATTCAGCTGAGGGGAGCGAGTTCTGGAGTGCCCTTCTGGAGAAGGCCTATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'3-7,'3-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(7.7=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAGACCCCCAGTTCATTA
R:
CTTCTCCAGAAGGGCACTCCA
Band lengths:
186-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]