DreEX0018815 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26324210-26333220:-
Coord C1 exon
chr22:26333151-26333220
Coord A exon
chr22:26326537-26326655
Coord C2 exon
chr22:26324210-26324343
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCTGTCGCTCTGTTTTTTAGGTG
3' ss Score
12.08
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAATTATGCCAGAAACCACGCTTCATCGTTGGTGGGGCCACAAAAACGGATATCTGTCAAGGAGCTTTGG
Seq A exon
GTGACTGTTGGCTGCTGGCTGCTATTGCCTCCCTGACGCAGAATGAAGATGTTTTGGCAAGAGTTGTGCCCAATGGACAGGAGTTTGATGGCACTTATGCAGGAATCTTCCATTTCCAG
Seq C2 exon
TTCTGGCAGTTTGGCGAGTGGGTGGATGTGGTCATTGACGACCGGCTGCCGGTGAAAGATGGCGAGCTGTTGTTTGTTCACTCCGCTGAGAAAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(14.5=100)
A:
PF0064816=Peptidase_C2=FE(13.1=100)
C2:
PF0064816=Peptidase_C2=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTATGCCAGAAACCACGCT
R:
TAGCATAGGCCTTCTCCAGCA
Band lengths:
203-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]