GgaEX6029100 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17034794-17040336:-
Coord C1 exon
chr3:17040267-17040336
Coord A exon
chr3:17035168-17035286
Coord C2 exon
chr3:17034794-17034927
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTTTTTTTTTTACAGGGG
3' ss Score
10.79
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GAGCTGTGTTCCTGTCCGCGGTTCATCGCCGGCGGAGCCACGCGCACCGACATCTGCCAAGGAGCCCTGG
Seq A exon
GGGACTGCTGGCTCTTGGCAGCTATTGCCTCCCTCACTCTGAATGAAGAAATTCTGGCCCGTGTTGTTCCCAGAGACCAGAGCTTCCAGGATGAATATGCAGGAATCTTCCACTTCCAG
Seq C2 exon
TTCTGGCAGTACGGAGAGTGGGTGGACGTCGTGGTGGATGACCGGCTGCCCACCAAGAACGGGGAGCTGCTCTTCGTGCACTCGGCAGAGGGCAGCGAGTTCTGGAGCGCACTGCTGGAGAAGGCCTACGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'3-4,'3-3,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(39.0=100)
A:
PF0064816=Peptidase_C2=FE(13.0=100)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Skipping Isoform:
ENSGALT00000015245fB5742
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTGTCCGCGGTTCATC
R:
CGTAGGCCTTCTCCAGCAGT
Band lengths:
194-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]