MmuEX6033776 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56347129-56351743:-
Coord C1 exon
chr19:56351432-56351743
Coord A exon
chr19:56350289-56350393
Coord C2 exon
chr19:56347129-56347227
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTCTCTTTTGTCAGAAC
3' ss Score
9.24
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGAAATACAAAGAGGACTATGAAAGGTCCAGAGGGAAACTCATTGGGGCGAAGAGTGCACAGGGGGATTCGCAGATGAGCCACTCCCTGCAGATGTCGAAGCTACAGAGTGACCTGGAGTACAAGAAGGGCTTTGAAGACACCAGATCTCAGTGCCACATCTCCCTTGACATGGTTCACCTCGTCCATGCTCGCCAGGCACAGCACCTAGCCACAGACGTAGGCTACAGGACAGCGTCTCACTGCTTCACGGCTCTGCCCACAGACATGAAGGTGGAGTGGGCCAAGAAGGCTTACGGCCTGCAGAGTGAT
Seq A exon
AACCAATACAGGGCAGACATGAAGTGGATGAAAGGCACAGGCTGGGTGGCCACCGGGTCATTACATGTGGAGCAGGCGAAGAAGGCAGGAGAACTCATTAGTGAG
Seq C2 exon
AAGAAGTACCGTCAGCACCCAGATGCTTTGAAGTTTACCAGTATTAAAGACACTCCGGAGATGGTCCAGGCCAGGATTAGTTATACCCAAGCAGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'28-30,'28-28,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.086 C2=0.030
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
A:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(57.1=45.7)
C2:
PF0088013=Nebulin=PD(35.7=30.3),PF0088013=Nebulin=PU(55.2=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGCAGATGTCGAAGCTA
R:
ATCTGGGTGCTGACGGTACTT
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types