RnoEX0060892 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277132228-277137134:-
Coord C1 exon
chr1:277136823-277137134
Coord A exon
chr1:277135359-277135463
Coord C2 exon
chr1:277132228-277132326
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTCCTTTTTCCTTTGTCAGAAC
3' ss Score
9.04
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGAAGTACAAGGAGGACTATGAAAGGTCCAGAGGGAAACTCATCGGGGCGAAGAGCGCACAGGGGGATTCGCAGATGAGCCACTCGCTGCAGATGTCTAAGCTACAGAGTGAACTGGAGTACAAGAAGGGCTTTGAAGATACCAGATCTCAGTACCACGTCTCCCTCGACATGATTCACCTCGCCCATGCTCGCCAGGCGCAGCACTTAGCCACAGATGTAGGCTACAGGACGGCGTCGCACTGTTTCACAGCTCTGCCCACAGACATGAAGGTGGAGTGGGCCAAGAAGGCCTACAGCCTGCAGAGTGAT
Seq A exon
AACCAATACAGGGCAGACATGAAGTGGATGAAAGGCACAGGCTGGGTGGCCACCGGGTCATTAAATGTGGAGCAGGCGAAGAAGGCAGGAGAACTCATTAGCGAG
Seq C2 exon
AAGAAGTACCGTCAGCATCCAGATGCTTTGAAGTTTACCAGTATTAAAGACACTCCGGAGATGGTCCAGGCCAGGATTAGTTATACCCAAGCAGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'28-31,'28-30,29-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=0.086 C2=0.030
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
A:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.6=42.9)
C2:
PF0088013=Nebulin=PD(37.0=30.3),PF0088013=Nebulin=PU(55.2=48.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCACGTCTCCCTCGACAT
R:
AACTAATCCTGGCCTGGACCA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]