BtaEX0024893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34369595-34374226:-
Coord C1 exon
chr26:34373915-34374226
Coord A exon
chr26:34372702-34372806
Coord C2 exon
chr26:34369595-34369693
Length
105 bp
Sequences
Splice sites
3' ss Seq
CCCCCTTTCTCCTTTGTCAGAAC
3' ss Score
9.18
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGAAGTACAAAGAAGATTATGAAAAATCCAGAGGGAAGCTCATTGGAGCTCAGGGTGCCCAGGGGGATTCGCAAATGAGCCACTCGCTGCAAATGTCCAAGCTCCAGAGTGAACTGGAATACAAGAAGGGCTTCGAGGACACCAAGTCTCAGTGCCATGTCCCCCTGGACATGATCCACCTCGTGCATGCCCGCAAGGCTCAGCACTTAGCCACAGACATAGGCTACAAGACGGCATCCCATCACTTTACAGCTTTGCCCACAGACATGAAGGTGGAATGGGCCAAGAAGGCTTACGGTTTACAGAGTGAT
Seq A exon
AACCAATACAGGGCAGATGTGAAGTGGATGAAAGGGACGGGCTGGGTCGCCACCGGGTCATTAAATGTGGAGCAGGCGAAGAAGGCAGGAGAACTCATTAGCGAG
Seq C2 exon
AAGAAGTACCGGCAGCATCCAGATGCTTTGAAGTTTACCAGTATTAAAGACACTCCGGAGATGGTCCAGGCCAGAATTAGTTATACCCAAGCAGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327_MULTIEX1-1/16=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.086 C2=0.030
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=PU(53.6=14.4)
A:
PF0088013=Nebulin=PD(39.3=31.4),PF0088013=Nebulin=PU(55.6=42.9)
C2:
PF0088013=Nebulin=PD(37.0=30.3),PF0088013=Nebulin=PU(55.2=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAGGGCTTCGAGGACAC
R:
GGACCATCTCCGGAGTGTCTT
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development