GgaEX7006569 @ galGal4
Exon Skipping
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:27006660-27010285:-
Coord C1 exon
chr6:27009974-27010285
Coord A exon
chr6:27008876-27008980
Coord C2 exon
chr6:27006660-27006758
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTTTGTCAGAAC
3' ss Score
9.38
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATTAAATATAAGGAAGGTTATGAGAAGATGAAGGGTAAGCTGATTGGAGTAAAAGCTGTGGAGGAAGATTCAAAGATGGCTCATTCCCTTCAAATGTCAAAACTGCAGAGCGATCTGGAGTACAAGAAGGCATTTGAGGACACAAAGAATCAGTTCCAGGTCTCCATGGACATGGCTAACCTTGTCCATGCCAAAAAGGCTCAGAATTTGGCTTCAGATAAAGGATACAGGACAGCCCTCCATCACTACACTGTCTTGCCTACTGACAGGAAAGTGGCATGGGCCAAATGGGCGTATGGATTGCAAAGTGAT
Seq A exon
AACCGATACAGAGCAGATTTGAACTGGATGAAAGGAGCTGGATGGATAGCCACTGGGTCATTAAATGTGGAGCAGGCTAAGAAGGCAGGAGAACTCATTAGTGAG
Seq C2 exon
AAGAAGTACCGTCAGCATCCATATGCTTTGAAGTTTACCAGTATTAAAGACACTCCTGAGATGATCCAGGCTAGAATTAGTTATAACCAGGCTGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914-'30-27,'30-25,31-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=25.0)
A:
PF0088013=Nebulin=PU(55.6=42.9)
C2:
PF0088013=Nebulin=PD(37.0=30.3),PF0088013=Nebulin=PU(55.2=48.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAAAGAATCAGTTCCAGGT
R:
AGCCTGGATCATCTCAGGAGT
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]