MmuEX6034676 @ mm9
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16185177-16196268:-
Coord C1 exon
chr8:16196080-16196268
Coord A exon
chr8:16189923-16190092
Coord C2 exon
chr8:16185177-16185333
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAATGTCCCATTTATTTTAGCTG
3' ss Score
6.56
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AATATGACCTGGAGCCCTGTGATGACCCTGGAGTCCCTGCCTTCAGCCGCAGAATTGGGTTTCAGTTCGGTGTGGGTGACACCCTGGCTTTCACCTGCTTCCAGGGATACCGCTTAGAAGGTGCAACCAAGCTTACCTGCCTGGGTGGGGGACGCCGAGTGTGGAGTGCACCTCTGCCAAGGTGTGTGG
Seq A exon
CTGAATGTGGAGCAAGCGTCAAAGGAAATGAAGGAACATTACTCTCTCCAAATTTCCCATCCCATTATGATAATAACCATGAGTGTATCTATAAAATAGAAACAGAAGCCGGGAAGGGGATCCATCTCAGAGCTCGAACCTTCCAGCTCTTCGAAGGAGACACTCTAAAG
Seq C2 exon
GTTTACGATGGAAAGGACAGCTCCTCAAGGTCACTGGGTGTCTTCACAAGGAGCGAATTCATGGGGCTGGTGCTCAACAGCACCTCCAACCACCTGAGGCTGGAGTTCAACACCAACGGGTCGGACACCGCCCAAGGCTTCCAGCTCACCTACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'27-32,'27-30,28-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGTTTCAGTTCGGTGTGG
R:
GTTGAACTCCAGCCTCAGGTG
Band lengths:
246-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: