BtaEX6106325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1358551-1376492:-
Coord C1 exon
chr27:1376304-1376492
Coord A exon
chr27:1365663-1365832
Coord C2 exon
chr27:1358551-1358707
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAATGTCCTGTTTATTTTAGCTG
3' ss Score
7.73
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGTACGACCTCGAGCCATGTGATGACCCTGGCGTCCCTGCCTTCAGCAGAAGAATCGGCTTTCACTTCGGAGTCGGGGACGCACTGACCTTCTCCTGCTTCCCGGGTTACCGCTTAGAAGGTGCTACCAAGCTCACGTGCCTGGGTGGGGGCCGCCGTGTGTGGAGTGCACCTCTGCCAAGGTGTGTGG
Seq A exon
CTGAATGTGGAGCAAGTGTCAAAGGAAATGAAGGAACGTTGCTGTCTCCAAATTTCCCGTCAAACTATGATAATAACCATGAGTGTATCTATAAAATTGAAACAGAAGCTGGCAAGGGGATCCATCTCAGAGCACGAAGCTTCCAGCTGTTTGAAGGAGATATTCTGAAG
Seq C2 exon
GTCTATGATGGAAAGGACAGCTCGTCACGGCCCCTGGGTGCCTTCACTAGGAACGAGCTGGTGGGGCTCATCCTGAACAGCACCTCCAACCACCTGTGGCTGGAGTTCAACTCCAACGGATCCGACACGGACCAGGGCTTTCAGCTCACCTACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739-'10-10,'10-9,11-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGACCTCGAGCCATGTGAT
R:
GCTCGTTCCTAGTGAAGGCAC
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]