DreEX6073796 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36763658-36767659:-
Coord C1 exon
chr19:36767471-36767659
Coord A exon
chr19:36763918-36764087
Coord C2 exon
chr19:36763658-36763814
Length
170 bp
Sequences
Splice sites
3' ss Seq
ACTCTCCTTCTTTTCTGCAGCTG
3' ss Score
10.77
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
Exon sequences
Seq C1 exon
AATATGACCTGGAGCCTTGCGAGGATCCTGGGATCCCCCCCTTCAGCACTCGTAAGGGTCTGCAGTTTGGGGTTGGGGATGCGCTCATCTTCTCCTGTTTTCCGGGGTATCGTCTTGAGGGGCCTGCGAGGGTGGTGTGTTTAGGGGGGCGTCGGAGGGTCTGGAGTTCCCCTCTGCCAAGGTGTGTTG
Seq A exon
CTGAATGTGGATCATCTGTAACTGGAAAACAAGGTGTTTTACTCTCTCCTAATTACCCTGGTTACTATGGTAATGACCATGAGTGCATCTACTCCATTCAAACTCAACCTGGTAAAGGGATCCAGCTCAGAGCTCGTGATTTCCACCTGGAGGAAGACGACATGCTTAAG
Seq C2 exon
GTATATGATGGCAACAGCAACAGTGCCCGACTGCTGGGCACCTTCACGGGCACAGAGCTGATGGATGTCACTCTGAACAGCACGTCCAGCTCCATGTGGCTTGAGTTCATTAGCAACAGTGAGAACACCAGCAAAGGGTTTGAGCTGCACTTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'28-29,'28-28,29-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCCTGTTTTCCGGGGT
R:
GTGAAGTGCAGCTCAAACCCT
Band lengths:
257-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]