RnoEX0024850 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146576114-146593243:+
Coord C1 exon
chr5:146576114-146576302
Coord A exon
chr5:146581589-146581758
Coord C2 exon
chr5:146593087-146593243
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATTGTGGTTGTCGTTCCAGCGG
3' ss Score
7.05
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTATGACCTGGAGCCCTGTGAAGAGCCTGAGGTTCCGGCCTACAGCATCCGAAAGGGCTTGCAGTTTGGCGTGGGTGACACCCTGACCTTTTCCTGCTTCCCCGGGTACCGTCTGGAGGGCACGGCCCGCATCACGTGCCTGGGGGGCAGACGGCGCCTGTGGAGTTCGCCTCTGCCAAGGTGTGTTG
Seq A exon
CGGAGTGTGGGAACTCGGTCACGGGCACTCAGGGCACTCTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAATCACGAGTGTATCTACTCCATCCAGACCCAGCCAGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAACTCGCTGAAGGAGACCTCCTCAAG
Seq C2 exon
GTCTATGACGGCAGTAACAACTCCGCCCGTTTGCTGGGGGTCTTCAGTCGCTCTGAGATGTTGGGGGTGACTTTGAACAGCACATCCAGCAGCCTGTGGCTTGACTTCATCACCGATGCAGAAAACACCAGCAAAGGCTTCGAACTTCAATTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCTTTTCCTGCTTCCCC
R:
GCCTTTGCTGGTGTTTTCTGC
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]