GgaEX1017832 @ galGal3
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
NA
Coordinates
chr23:5082191-5086615:+
Coord C1 exon
chr23:5082191-5082379
Coord A exon
chr23:5085782-5085951
Coord C2 exon
chr23:5086459-5086615
Length
170 bp
Sequences
Splice sites
3' ss Seq
GGTTCTGTGTCTTTCTGTAGCTG
3' ss Score
8.63
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AATACGACCTGGAGCCCTGCGATGAGCCAGAGGTCCCAGCCTACAGCATCAGGAAGGGGCTGCAGTTCGGCGTGGGCGACGTCCTCACCTTCTCCTGCTTCCCCGGGTACCGCCTGGAGGGCACGGCGCGCATCACCTGCCTCGGGGGGAGACGGCGTGTGTGGAGTTCGCCTCTGCCAAGGTGTGTTG
Seq A exon
CTGAATGTGGTTCGTCTGTAACTGGAACTCAGGGTGTTCTGCTGTCCCCCAACTACCCAATAAACTACAACAACAACCACGAGTGCATCTACTCCATCCAGACACAGCCAGGGAAGGGGATCCAGCTGAAAGCCAGGACTTTTGAACTGGAAGCAGGAGATGTCCTCAAG
Seq C2 exon
GTGTATGATGGCAGCAACAGCTCTGCTCGCCTGCTGGGTTCCTTCAGCCGCTCGGAAATGCTCAGCACCAGCATCAACAGCACTTCCAGCAGCATGTGGCTCGAGTTCATCACCAACAGCGAGAACACCAGCAAAGGCTTTGAGCTGCAGTTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'29-30,'29-29,30-30=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCACCTTCTCCTGCTTCC
R:
TTTGCTGGTGTTCTCGCTGTT
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]