MmuEX6096217 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128072146-128090095:+
Coord C1 exon
chr4:128072146-128072326
Coord A exon
chr4:128077545-128077714
Coord C2 exon
chr4:128089939-128090095
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATTCTAATTGTCGTTCCAGCGG
3' ss Score
6.84
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTATGACCTGGAGCCCTGCGAAGAGCCCGAGGTTCCAGCCTACAGCATCCGAAAGGGCTTGCAGTTTGGTGTGGGCGACACCCTGACCTTTTCCTGCTTCCCCGGGTACCGTCTGGAGGGCACGGCCCGCATCACGTGCCTGGGGGGCAGACGGCGCCTGTGGAGCTCGCCTCTGCCAAG
Seq A exon
CGGAGTGTGGGAACTCAGTCACAGGCACTCAGGGCACTTTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAACCACGAGTGTATCTACTCCATCCAGACCCAGCCGGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAGCTCGCTGAAGGAGACCTCCTCAAG
Seq C2 exon
GTCTATGACGGCACTAACAACTCTGCCCGTTTGCTGGGGGTCTTCAGCCGCTCTGAGATGTTGGGGGTGACTTTGAACAGCACGTCTAGCAGCTTGTGGCTTGACTTCATCACAGATGCAGAAAACACCAGCAAAGGCTTTGAACTTCAGTTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'21-23,'21-22,23-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCCTGACCTTTTCCTG
R:
GCCTTTGCTGGTGTTTTCTGC
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: