BtaEX6019079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112686500-112705882:+
Coord C1 exon
chr3:112686500-112686688
Coord A exon
chr3:112693336-112693505
Coord C2 exon
chr3:112705726-112705882
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATTGTGATTCTGTTTCCAGCTG
3' ss Score
8.5
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
AGTATGACCTGGAACCCTGCGAGGAGCCCGAGGTCCCAGCCTACAGCATCCGGAAGGGCTTGCAGTTCGGCGTAGGCGACACCTTGACCTTCTCCTGCTTCCCCGGGTACCGTCTGGAGGGCACGGCCCGCATCACGTGCCTGGGGGGCAGACGGCGCCTGTGGAGTTCGCCTCTGCCAAGGTGTGTTG
Seq A exon
CTGAGTGTGGGAATTCGGTCACGGGCACTCAGGGTACTCTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAACCACGAGTGCATCTACTCCATCCAGACCCAGCCAGGGAAGGGAATTCAGCTCAAAGCCAAGGCGTTTGAACTCTCTGAAGGCGATGTCCTCAAG
Seq C2 exon
GTCTACGATGGCAATAACAACTCTGCCCGTCTGCTCGGGGTGTTCAGCCGCACCGAGTTGCTGGGGGTGACACTGAATAGCACGTCCAGCAGTCTGTGGCTTGATTTTATCACTGATGCTGAGAACACCAGCAAGGGCTTTGAGCTGCACTTTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784-'33-32,'33-30,34-32=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTTCTCCTGCTTCCCC
R:
AAAGTGCAGCTCAAAGCCCTT
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]