MmuEX6096217 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128394902-128412851:+
Coord C1 exon
chr4:128394902-128395082
Coord A exon
chr4:128400301-128400470
Coord C2 exon
chr4:128412695-128412851
Length
170 bp
Sequences
Splice sites
3' ss Seq
TATTCTAATTGTCGTTCCAGCGG
3' ss Score
6.84
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AGTATGACCTGGAGCCCTGCGAAGAGCCCGAGGTTCCAGCCTACAGCATCCGAAAGGGCTTGCAGTTTGGTGTGGGCGACACCCTGACCTTTTCCTGCTTCCCCGGGTACCGTCTGGAGGGCACGGCCCGCATCACGTGCCTGGGGGGCAGACGGCGCCTGTGGAGCTCGCCTCTGCCAAG
Seq A exon
CGGAGTGTGGGAACTCAGTCACAGGCACTCAGGGCACTTTGCTGTCCCCCAACTTTCCTGTGAACTACAATAACAACCACGAGTGTATCTACTCCATCCAGACCCAGCCGGGGAAGGGGATTCAGCTTAAAGCCAAGGCATTTGAGCTCGCTGAAGGAGACCTCCTCAAG
Seq C2 exon
GTCTATGACGGCACTAACAACTCTGCCCGTTTGCTGGGGGTCTTCAGCCGCTCTGAGATGTTGGGGGTGACTTTGAACAGCACGTCTAGCAGCTTGTGGCTTGACTTCATCACAGATGCAGAAAACACCAGCAAAGGCTTTGAACTTCAGTTCTCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'19-35,'19-27,27-35=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.5)
A:
PF0043115=CUB=PU(50.9=94.7)
C2:
PF0043115=CUB=PD(47.2=94.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACACCCTGACCTTTTCCTG
R:
GCCTTTGCTGGTGTTTTCTGC
Band lengths:
243-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types